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Documentation Index

Fetch the complete documentation index at: https://mintlify.com/KeygraphHQ/shannon/llms.txt

Use this file to discover all available pages before exploring further.

This guide covers common issues you may encounter when running Shannon and how to resolve them.

Repository Issues

Repository Not Found

Problem: Error message stating repository not found. Solution: The REPO parameter must be a folder name inside ./repos/, not an absolute path. Clone or symlink your repository there first:
ln -s /path/to/repo ./repos/my-repo

Temporal Issues

Temporal Not Ready

Problem: Shannon fails to start with “Temporal not ready” error. Solution: Wait for the health check to complete or check Temporal logs:
docker compose logs temporal

Worker Not Processing

Problem: Workflows are queued but not executing. Solution: Check if all containers are running:
docker compose ps
Ensure the worker container is healthy and running.

State and Data Issues

Reset State

Problem: Need to completely reset Shannon’s state and data. Solution: Stop Shannon with full cleanup:
./shannon stop CLEAN=true
This will delete all workflow data, audit logs, and workspaces. Make sure to back up any reports you need.

Network Issues

Local Applications Unreachable

Problem: Shannon cannot connect to applications running on localhost. Solution: Docker containers cannot reach localhost on your host machine. Use host.docker.internal instead:
./shannon start URL=http://host.docker.internal:3000 REPO=repo-name
See Platform-Specific Instructions for more details.

Tool and Performance Issues

Missing Tools

Problem: Errors about missing nmap, subfinder, or whatweb tools. Solution: Use PIPELINE_TESTING=true to skip external tools with graceful degradation:
./shannon start URL=https://example.com REPO=repo-name PIPELINE_TESTING=true
This mode is useful for quick testing but may reduce the depth of reconnaissance.

Container Permission Issues

Problem: Permission denied errors when running Docker commands or accessing output files. Solution: On Linux, you may need to run commands with sudo depending on your Docker setup:
sudo ./shannon start URL=https://example.com REPO=repo-name
Alternatively, add your user to the docker group:
sudo usermod -aG docker $USER
Log out and back in for the changes to take effect.

API and Authentication Issues

Rate Limiting

Problem: Hitting Anthropic API rate limits during testing. Solution: If using Anthropic subscription plans with a rolling 5-hour window, add retry configuration to your config file:
pipeline:
  retry_preset: subscription          # Extends max backoff to 6h, 100 retries
  max_concurrent_pipelines: 2         # Run 2 of 5 pipelines at a time
The max_concurrent_pipelines setting (1-5, default: 5) controls how many vulnerability pipelines run simultaneously. Lower values reduce burst API usage but increase total runtime.

Authentication Errors

Problem: API key authentication fails. Solution: Verify your API key is correctly set in the .env file:
cat .env | grep ANTHROPIC_API_KEY
Ensure there are no extra spaces or quotes around the key value.

Getting Help

If you encounter issues not covered here:

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